NSA: Post-normalization of total copy numbers

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Post-normalization of total copy-number estimates.

Author
Maria Ortiz-Estevez <mortizest@gmail.com>, Ander Aranburu <aaranburu@ceit.es>, Angel Rubio <arubio@ceit.es>
Date of publication
2012-12-21 09:17:05
Maintainer
Maria Ortiz-Estevez <mortizest@gmail.com>
License
LGPL (>= 2.1)
Version
0.0.32
URLs

View on CRAN

Man pages

fitNSA.matrix
Find normal regions
Non-documented_objects
Non-documented objects
NSAByTotalAndFracB.matrix
Finds normal regions within tumoral samples (total,fracB)
NSANormalization
The NSANormalization class
NSA-package
Package NSA
process.NSANormalization
Finds normal regions within tumoral samples
process.SampleNormalization
Finds normal regions within tumoral samples
sampleNByTotalAndFracB.numeric
Normalize total copy numbers by samples (total,fracB)
SampleNormalization
The SampleNormalization class
snpsNByTotalAndFracB.matrix
Normalize allele-specific copy numbers (total,fracB)
SNPsNormalization
The SNPsNormalization class

Files in this package

NSA
NSA/MD5
NSA/man
NSA/man/fitNSA.matrix.Rd
NSA/man/NSA-package.Rd
NSA/man/Non-documented_objects.Rd
NSA/man/SampleNormalization.Rd
NSA/man/process.NSANormalization.Rd
NSA/man/snpsNByTotalAndFracB.matrix.Rd
NSA/man/NSANormalization.Rd
NSA/man/SNPsNormalization.Rd
NSA/man/process.SampleNormalization.Rd
NSA/man/NSAByTotalAndFracB.matrix.Rd
NSA/man/sampleNByTotalAndFracB.numeric.Rd
NSA/DESCRIPTION
NSA/inst
NSA/inst/exData
NSA/inst/exData/SnpsNormalization_Total.Rbin
NSA/inst/exData/TotalAndFracBdata_chr1smp1.Rbin
NSA/inst/exData/SnpsNormalization_References.Rbin
NSA/incl
NSA/incl/NSA-SNPs-Sample-Normalization.Rex
NSA/incl/NSAByTotalAndFracB.Rex
NSA/incl/snpsNByTotalAndFracB.Rex
NSA/incl/999.missingdocs.txt
NSA/NAMESPACE
NSA/R
NSA/R/SampleNormalization.R
NSA/R/999.package.R
NSA/R/fitNSA.R
NSA/R/NSANormalization.R
NSA/R/zzz.R
NSA/R/fitSNPsN.R
NSA/R/NSAByTotalAndFracB.R
NSA/R/SNPsNormalization.R
NSA/R/snpsNByTotalAndFracB.R
NSA/R/fitSample.R
NSA/R/sampleNByTotalAndFracB.R
NSA/R/fitNSAcnPs.R
NSA/R/999.NonDocumentedObjects.R