NSAByTotalAndFracB.matrix: Finds normal regions within tumoral samples (total,fracB)
In NSA: Post-normalization of total copy numbers
Description
Usage
Arguments
Value
Description
Finds normal regions within tumoral samples (total,fracB), where total is the total (non-polymorphic) signal and
fracB is the allele B fraction.
It is only loci with a non-missing (NA) fracB value that are
considered to be SNPs and normalized by CalMaTe. The other loci
are left untouched.
Usage
1
2
## S3 method for class 'matrix'
NSAByTotalAndFracB(data, ..., verbose=FALSE)
Arguments
data
An Jx2 matrix, where J is the number of loci and
2 is total and fracB.
...
Not used.
verbose
See Verbose.
Value
Returns an Jx2 numeric array.
NSA documentation built on May 29, 2017, 3:36 p.m.
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Description Usage Arguments Value
Description
Finds normal regions within tumoral samples (total,fracB), where total is the total (non-polymorphic) signal and
fracB is the allele B fraction.
It is only loci with a non-missing (NA) fracB value that are
considered to be SNPs and normalized by CalMaTe. The other loci
are left untouched.
Usage
1 2 | ## S3 method for class 'matrix'
NSAByTotalAndFracB(data, ..., verbose=FALSE)
|
Arguments
data |
An Jx2 |
... |
Not used. |
verbose |
See |
Value
Returns an Jx2 numeric array.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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