Biocview "aCGH"

Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization
Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization
Analysis of Large Affymetrix Microarray Data Sets
Analysis of Large Affymetrix Microarray Data Sets
Analysis of Parent-Specific DNA Copy Numbers
Analysis of Parent-Specific DNA Copy Numbers
An R package for copy number data segmentation
An R package for copy number data segmentation
A package for survival time prediction based on a piecewise baseline hazard Cox regression model.
A package for survival time prediction based on a piecewise baseline hazard Cox regression model.
Bayesian Piecewise Constant Regression for DNA copy number estimation
Bayesian Piecewise Constant Regression for DNA copy number estimation
Chromosome Instability Index
Chromosome Instability Index
Clonality testing
Clonality testing
Comprehensive Pipeline for Analyzing and Visualizing Array-Based CGH Data
Comprehensive Pipeline for Analyzing and Visualizing Array-Based CGH Data
Comprehensive Pipeline for Analyzing and Visualizing Array-Based CGH Data
Copy-Number Analysis of Large Microarray Data Sets
Copy-Number Analysis of Large Microarray Data Sets
Copy Number study and Segmentation for multivariate biological data
Copy Number study and Segmentation for multivariate biological data
Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework
Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework
GAIA: An R package for genomic analysis of significant chromosomal aberrations.
GAIA: An R package for genomic analysis of significant chromosomal aberrations.
Gene Break Detection
Gene Break Detection
High-Throughput Sequence Analysis using the Aroma Framework
Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation
Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation
Multi sample aCGH analysis package using kernel convolution
Multi sample aCGH analysis package using kernel convolution
Objective Assessment of Copy-Number Estimates
Pairwise Integration of Functional Genomics Data
Pairwise INTegration of functional genomics data
Pairwise INTegration of functional genomics data
Post-normalization of total copy numbers
Post-normalization of total copy numbers
rcellminer: Molecular Profiles and Drug Response for the NCI-60 Cell Lines
rcellminer: Molecular Profiles and Drug Response for the NCI-60 Cell Lines
rcellminer: Molecular Profiles and Drug Response for the NCI-60 Cell Lines
rcellminer: Molecular Profiles and Drug Response for the NCI-60 Cell Lines
Segmentation of single- and multi-track copy number data by penalized least squares regression.
Segmentation of single- and multi-track copy number data by penalized least squares regression.
Segmentation of single- and multi-track copy number data by penalized least squares regression.
Semi-supervised adaptive-height snipping of the Hierarchical Clustering tree
Semi-supervised adaptive-height snipping of the Hierarchical Clustering tree
Statistics for Integrative Genomics Analyses in R
Statistics for Integrative Genomics Analyses in R
VegaMC: A Package Implementing a Variational Piecewise Smooth Model for Identification of Driver Chromosomal Imbalances in Cancer
VegaMC: A Package Implementing a Variational Piecewise Smooth Model for Identification of Driver Chromosomal Imbalances in Cancer