mBPCR: Bayesian Piecewise Constant Regression for DNA copy number estimation

Estimates the DNA copy number profile using mBPCR to detect regions with copy number changes

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("mBPCR")
AuthorP.M.V. Rancoita <rancoita.paola@gmail.com>, with contributions from M. Hutter <marcus.hutter@anu.edu.au>
Bioconductor views CopyNumberVariation Microarray SNP aCGH
Date of publicationNone
MaintainerP.M.V. Rancoita <rancoita.paola@gmail.com>
LicenseGPL (>= 2)
Version1.30.0
http://www.idsia.ch/~paola/mBPCR

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/mBPCR.R
build
build/vignette.rds
data
data/jekoChr11Array250Knsp.txt
data/rec10k.txt
inst
inst/doc
inst/doc/mBPCR.R
inst/doc/mBPCR.Rnw
inst/doc/mBPCR.pdf
inst/extdata
inst/extdata/rec10k.txt
man
man/computeMBPCR.Rd man/estGlobParam.Rd man/estProfileWithMBPCR.Rd man/estProfileWithMBPCRforOligoSnpSet.Rd man/importCNData.Rd man/jekoChr11Array250Knsp.Rd man/logAdd.Rd man/mBPCR-internal.Rd man/plotEstProfile.Rd man/rec10k.Rd man/writeEstProfile.Rd
vignettes
vignettes/mBPCR.Rnw

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