mBPCR: Bayesian Piecewise Constant Regression for DNA copy number estimation

Estimates the DNA copy number profile using mBPCR to detect regions with copy number changes

AuthorP.M.V. Rancoita <rancoita.paola@gmail.com>, with contributions from M. Hutter <marcus.hutter@anu.edu.au>
Date of publicationNone
MaintainerP.M.V. Rancoita <rancoita.paola@gmail.com>
LicenseGPL (>= 2)
Version1.28.0
http://www.idsia.ch/~paola/mBPCR

View on Bioconductor

Files

mBPCR/DESCRIPTION
mBPCR/NAMESPACE
mBPCR/R
mBPCR/R/mBPCR.R
mBPCR/build
mBPCR/build/vignette.rds
mBPCR/data
mBPCR/data/jekoChr11Array250Knsp.txt
mBPCR/data/rec10k.txt
mBPCR/inst
mBPCR/inst/doc
mBPCR/inst/doc/mBPCR.R
mBPCR/inst/doc/mBPCR.Rnw
mBPCR/inst/doc/mBPCR.pdf
mBPCR/inst/extdata
mBPCR/inst/extdata/rec10k.txt
mBPCR/man
mBPCR/man/computeMBPCR.Rd mBPCR/man/estGlobParam.Rd mBPCR/man/estProfileWithMBPCR.Rd mBPCR/man/estProfileWithMBPCRforOligoSnpSet.Rd mBPCR/man/importCNData.Rd mBPCR/man/jekoChr11Array250Knsp.Rd mBPCR/man/logAdd.Rd mBPCR/man/mBPCR-internal.Rd mBPCR/man/plotEstProfile.Rd mBPCR/man/rec10k.Rd mBPCR/man/writeEstProfile.Rd
mBPCR/vignettes
mBPCR/vignettes/mBPCR.Rnw

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