HCsnip: Semi-supervised adaptive-height snipping of the Hierarchical Clustering tree
Version 1.17.0

Decompose given hierarchical clustering tree into non-overlapping clusters in a semi-supervised way by using available patients follow-up information as guidance. Contains functions for snipping HC tree, various cluster quality evaluation criteria, assigning new patients to one of the two given HC trees, testing the significance of clusters with permutation argument and clusters visualization using sample's molecular entropy.

Package details

AuthorAskar Obulkasim
Bioconductor views Clustering GeneExpression Microarray aCGH
MaintainerAskar Obulkasim <[email protected]>
LicenseGPL (>= 2)
Version1.17.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("HCsnip")

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HCsnip documentation built on Nov. 17, 2017, 11:17 a.m.