RCASPAR: A package for survival time prediction based on a piecewise baseline hazard Cox regression model.

The package is the R-version of the C-based software \bold{CASPAR} (Kaderali,2006: \url{http://bioinformatics.oxfordjournals.org/content/22/12/1495}). It is meant to help predict survival times in the presence of high-dimensional explanatory covariates. The model is a piecewise baseline hazard Cox regression model with an Lq-norm based prior that selects for the most important regression coefficients, and in turn the most relevant covariates for survival analysis. It was primarily tried on gene expression and aCGH data, but can be used on any other type of high-dimensional data and in disciplines other than biology and medicine.

AuthorDouaa Mugahid, Lars Kaderali
Date of publicationNone
MaintainerDouaa Mugahid <douaa.mugahid@gmail.com>, Lars Kaderali <lars.kaderali@uni-greifswald.de>
LicenseGPL (>=3)
Version1.20.0

View on Bioconductor

Files

RCASPAR/DESCRIPTION
RCASPAR/NAMESPACE
RCASPAR/R
RCASPAR/R/AUC.R RCASPAR/R/STpredictor_BLH.R RCASPAR/R/k-xvBLH.R RCASPAR/R/kmplt.R RCASPAR/R/kmplt_svrl.R RCASPAR/R/logrnk.R RCASPAR/R/pltgamma.R RCASPAR/R/pltprior.R RCASPAR/R/survivAURC.R RCASPAR/R/survivROC.R RCASPAR/R/weightestimator_BLH.R RCASPAR/R/weights_BLH.R RCASPAR/R/weights_xvBLH.R
RCASPAR/build
RCASPAR/build/vignette.rds
RCASPAR/data
RCASPAR/data/Bergamaschi.RData
RCASPAR/data/survData.RData
RCASPAR/inst
RCASPAR/inst/doc
RCASPAR/inst/doc/RCASPAR.R
RCASPAR/inst/doc/RCASPAR.Rnw
RCASPAR/inst/doc/RCASPAR.pdf
RCASPAR/man
RCASPAR/man/Bergamaschi.Rd RCASPAR/man/RCASPAR-package.Rd RCASPAR/man/STpredictor_BLH.Rd RCASPAR/man/STpredictor_xvBLH.Rd
RCASPAR/man/deriv_weight_estimator_BLH.rd
RCASPAR/man/deriv_weight_estimator_BLH_noprior.rd
RCASPAR/man/kmplt.Rd RCASPAR/man/kmplt_svrl.Rd RCASPAR/man/logrnk.Rd RCASPAR/man/pltgamma.Rd RCASPAR/man/pltprior.Rd RCASPAR/man/simpson.Rd RCASPAR/man/survData.Rd RCASPAR/man/survivAURC.Rd RCASPAR/man/survivROC.Rd RCASPAR/man/trapezoid.Rd
RCASPAR/man/weight_estimator_BLH.rd
RCASPAR/man/weight_estimator_BLH_noprior.rd
RCASPAR/man/weights_BLH.rd
RCASPAR/man/weights_xvBLH.rd
RCASPAR/vignettes
RCASPAR/vignettes/RCASPAR.Rnw
RCASPAR/vignettes/censor_table.PNG
RCASPAR/vignettes/covar_table.PNG
RCASPAR/vignettes/functions_fig.PNG

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.