Vega: An R package for copy number data segmentation

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Vega (Variational Estimator for Genomic Aberrations) is an algorithm that adapts a very popular variational model (Mumford and Shah) used in image segmentation so that chromosomal aberrant regions can be efficiently detected.

Author
Sandro Morganella
Date of publication
None
Maintainer
Sandro Morganella <sandro@ebi.ac.uk>
License
GPL-2
Version
1.22.0

View on Bioconductor

Man pages

G519
Granta-519 Data
plotSegmentation
Plot observations and the respective segmentation.
vega
This function computes, saves and returns the copy number...
Vega-package
An R package for copy number data segmentation

Files in this package

Vega/DESCRIPTION
Vega/NAMESPACE
Vega/R
Vega/R/plotSegmentation.R
Vega/R/vega.R
Vega/build
Vega/build/vignette.rds
Vega/data
Vega/data/G519.RData
Vega/inst
Vega/inst/doc
Vega/inst/doc/Vega.R
Vega/inst/doc/Vega.Rnw
Vega/inst/doc/Vega.pdf
Vega/man
Vega/man/G519.Rd
Vega/man/Vega-package.Rd
Vega/man/plotSegmentation.Rd
Vega/man/vega.Rd
Vega/src
Vega/src/vega.c
Vega/vignettes
Vega/vignettes/Vega.Rnw