Clonality: Clonality testing

Statistical tests for clonality versus independence of tumors from the same patient based on their LOH or genomewide copy number profiles

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("Clonality")
AuthorIrina Ostrovnaya
Bioconductor views Classification CopyNumberVariation Microarray aCGH
Date of publicationNone
MaintainerIrina Ostrovnaya <ostrovni@mskcc.org>
LicenseGPL-3
Version1.24.0

View on Bioconductor

Functions

ave.adj.probes Man page
calc.freq Man page
calculateLR Man page
chromosomePlots Man page
class.all Man page
Clonality Man page
clonality.analysis Man page
Clonality-package Man page
CM.pvalue Man page
complexts Man page
ECMtesting Man page
func Man page
genomewidePlots Man page
get.oneseg.bdry Man page
GL Man page
grantLR Man page
grid.lik Man page
histogramPlot Man page
indiv.test Man page
lcis Man page
LOHclonality Man page
LRpv Man page
LRtesting3or4tumors Man page
LRts Man page
model.lik Man page
mutation.proba Man page
mutation.rem Man page
oneseg Man page
prettyplot Man page
print.mutation.proba Man page
print.mutation.rem Man page
refvector Man page
segment1 Man page
SNVtest Man page
splitChromosomes Man page
tumors Man page
xidens Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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