Clonality testing

ave.adj.probes | Averaging of adjacent probes in copy number arrays |

chromosomePlots | Per-chromosome plots of the copy number arrays from a... |

clonality.analysis | Clonality testing using copy number data |

Clonality-internal | Internal Clonality functions |

Clonality-package | Clonality testing |

ECMtesting | Clonality testing of >=3 tumors using Extended Concordant... |

genomewidePlots | Plot of the genomewide copy number profiles of a pair of... |

grid.lik | Auxiliary function: Grid of conditional probabilities |

histogramPlot | Histrograms of Log-Likelihood Ratios |

lcis | Breast cancer data |

LOHclonality | Clonality testing using LOH (Loss of Heterozygosity) profiles |

LRtesting3or4tumors | Clonality testing of 3 or 4 tumors using Likelihood model... |

model.lik | Auxiliary likelihood Function |

mutation.proba | Probability of being clonal |

mutation.rem | Estimation of the random-effect model for clonality based on... |

print.mutation.proba | Print for the mutation.proba function |

print.mutation.rem | Print for the mutation.rem function |

SNVtest | Testing relatedness (clonality) of two tumors from the same... |

splitChromosomes | Chromosome splitting |

xidens | Auxiliary function computing the density of xi |

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.