pint: Pairwise INTegration of functional genomics data

Pairwise data integration for functional genomics, including tools for DNA/RNA/miRNA dependency screens.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("pint")
AuthorOlli-Pekka Huovilainen <ohuovila@gmail.com> and Leo Lahti <leo.lahti@iki.fi>
Bioconductor views DifferentialExpression GeneExpression Genetics Microarray aCGH
Date of publicationNone
MaintainerOlli-Pekka Huovilainen <ohuovila@gmail.com>
LicenseBSD_2_clause + file LICENSE
Version1.26.0
https://github.com/antagomir/pint

View on Bioconductor

Functions

[[ Man page
[[<- Man page
as.data.frame,ChromosomeModels-method Man page
as.data.frame,GenomeModels-method Man page
ChromosomeModels-class Man page
[[<-,ChromosomeModels-method Man page
[[,ChromosomeModels-method Man page
[[,ChromosomeModels-method Man page
dependency score plotting Man page
findModel Man page
findModel,ChromosomeModels-method Man page
findModel,GenomeModels-method Man page
fit.byname Man page
fit.cgh.mir.byname Man page
fit.cgh.mrna.byname Man page
fixed.window Man page
geneCopyNum Man page
GeneDependencyModel-class Man page
geneExp Man page
GenomeModels-class Man page
[[<-,GenomeModels-method Man page
[[,GenomeModels-method Man page
getArm Man page
getArm,ChromosomeModels-method Man page
getArm,GeneDependencyModel-method Man page
getChromosome Man page
getChromosome,ChromosomeModels-method Man page
getChromosome,GeneDependencyModel-method Man page
getGeneName Man page
getGeneName,ChromosomeModels-method Man page
getGeneName,GeneDependencyModel-method Man page
getLoc Man page
getLoc,ChromosomeModels-method Man page
getLoc,GeneDependencyModel-method Man page
getModelMethod Man page
getModelMethod,ChromosomeModels-method Man page
getModelMethod,GenomeModels-method Man page
getModelNumbers Man page
getModelNumbers,ChromosomeModels-method Man page
getModelNumbers,GenomeModels-method Man page
get.neighboring.probes Man page
get.neighs Man page
getParams Man page
getParams,ChromosomeModels-method Man page
getParams,GenomeModels-method Man page
getPArm Man page
getPArm,ChromosomeModels-method Man page
getQArm Man page
getQArm,ChromosomeModels-method Man page
getScore Man page
getScore,ChromosomeModels-method Man page
getScore,GeneDependencyModel-method Man page
getWindowSize Man page
getWindowSize,ChromosomeModels-method Man page
getWindowSize,GeneDependencyModel-method Man page
getWindowSize,GenomeModels-method Man page
getZ,GeneDependencyModel-method Man page
isEmpty Man page
isEmpty,ChromosomeModels-method Man page
isEmpty,ChromosomeModels-method Man page
iterative.window Man page
join.top.regions Man page
order.feature.info Man page
orderGenes Man page
orderGenes,ChromosomeModels-method Man page
orderGenes,GenomeModels-method Man page
pint.data Man page
pint.match Man page
plot.ChromosomeModels Man page
plot.GeneDependencyModel Man page
plot.GenomeModels Man page
screen.cgh.mir Man page
screen.cgh.mrna Man page
setArm<- Man page
setArm<-,GeneDependencyModel-method Man page
setChromosome<- Man page
setChromosome<-,GeneDependencyModel-method Man page
setGeneName<- Man page
setGeneName<-,GeneDependencyModel-method Man page
setLoc<- Man page
setLoc<-,GeneDependencyModel-method Man page
sparse.window Man page
summarize.region.parameters Man page
topGenes Man page
topGenes,ChromosomeModels-method Man page
topGenes,GenomeModels-method Man page
topModels Man page
topModels,ChromosomeModels-method Man page
topModels,GenomeModels-method Man page
W.effects Man page
z.effects Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.