get.neighs: get.neighs

In pint: Pairwise INTegration of functional genomics data

Description

Matching function called by the get.neighboring.probes

Usage

get.neighs(X, Y, xchrinds, ychrinds, max.dist, remove.duplicates = TRUE)

Arguments

X	Data object. See help(screen.cgh.mrna). For instance, geneExp from our example data set.
Y	Data object. See help(screen.cgh.mrna). For instance, geneCopyNum from our example data set.
xchrinds	chromosomal indices for the probes in X data set
ychrinds	chromosomal indices for the probes in Y data set
max.dist	consider probes within this chromosomal distance
remove.duplicates	remove duplicate probes in many-to-one matching cases, use the closest match

Value

List of matched X and Y indices.

Author(s)

Leo Lahti [e-mail]

References

See citation("pint")

Examples

# Intended for internal use.

pint documentation built on Oct. 31, 2019, 2:41 a.m.