API for pint
Pairwise INTegration of functional genomics data

Global functions
ChromosomeModels-class Man page
GeneDependencyModel-class Man page
GenomeModels-class Man page
W.effects Man page Source code
[[ Man page
[[,ChromosomeModels-method Man page Man page
[[,GenomeModels-method Man page
[[<- Man page
[[<-,ChromosomeModels-method Man page
[[<-,GenomeModels-method Man page
as.data.frame,ChromosomeModels-method Man page
as.data.frame,GenomeModels-method Man page
augment.region Source code
calculate.arm Source code
calculate.arm.sparse Source code
calculate.chr Source code
calculate.chr.sparse Source code
calculate.genome Source code
calculate.genome.sparse Source code
centerData Source code
closest Source code
dependency score plotting Man page
findModel Man page
findModel,ChromosomeModels-method Man page
findModel,GenomeModels-method Man page
fit.byname Man page
fit.cgh.mir.byname Man page Source code
fit.cgh.mrna.byname Man page Source code
fixed.window Man page Source code
geneCopyNum Man page
geneExp Man page
get.neighboring.probes Man page Source code
get.neighs Man page Source code
getArm Man page
getArm,ChromosomeModels-method Man page
getArm,GeneDependencyModel-method Man page
getChromosome Man page
getChromosome,ChromosomeModels-method Man page
getChromosome,GeneDependencyModel-method Man page
getGeneName Man page
getGeneName,ChromosomeModels-method Man page
getGeneName,GeneDependencyModel-method Man page
getLoc Man page
getLoc,ChromosomeModels-method Man page
getLoc,GeneDependencyModel-method Man page
getModelMethod Man page
getModelMethod,ChromosomeModels-method Man page
getModelMethod,GenomeModels-method Man page
getModelNumbers Man page
getModelNumbers,ChromosomeModels-method Man page
getModelNumbers,GenomeModels-method Man page
getPArm Man page
getPArm,ChromosomeModels-method Man page
getParams Man page
getParams,ChromosomeModels-method Man page
getParams,GenomeModels-method Man page
getQArm Man page
getQArm,ChromosomeModels-method Man page
getScore Man page
getScore,ChromosomeModels-method Man page
getScore,GeneDependencyModel-method Man page
getWindowSize Man page
getWindowSize,ChromosomeModels-method Man page
getWindowSize,GeneDependencyModel-method Man page
getWindowSize,GenomeModels-method Man page
getZ,GeneDependencyModel-method Man page
imputation Source code
isEmpty Man page
isEmpty,ChromosomeModels-method Man page Man page
iterative.window Man page Source code
join.top.regions Man page Source code
matrix.print Source code
onAttach Source code
order.feature.info Man page Source code
orderGenes Man page
orderGenes,ChromosomeModels-method Man page
orderGenes,GenomeModels-method Man page
pick.chr.arm Source code
pint.data Man page Source code
pint.match Man page Source code
plot.ChromosomeModels Man page Source code
plot.GeneDependencyModel Man page Source code
plot.GenomeModels Man page Source code
screen.cgh.mir Man page Source code
screen.cgh.mrna Man page Source code
setArm<- Man page
setArm<-,GeneDependencyModel-method Man page
setChromosome<- Man page
setChromosome<-,GeneDependencyModel-method Man page
setGeneName<- Man page
setGeneName<-,GeneDependencyModel-method Man page
setLoc<- Man page
setLoc<-,GeneDependencyModel-method Man page
sparse.window Man page Source code
summarize.region.parameters Man page Source code
test.segmented Source code
topGenes Man page
topGenes,ChromosomeModels-method Man page
topGenes,GenomeModels-method Man page
topModels Man page
topModels,ChromosomeModels-method Man page
topModels,GenomeModels-method Man page
z.effects Man page Source code
pint documentation built on Nov. 17, 2017, 10:34 a.m.