get.neighboring.probes: Get neighboring probes

In pint: Pairwise INTegration of functional genomics data

Description

Mainly for internal use. Pick neighboring probes for a given probes based on chromosomal locations.

Usage

get.neighboring.probes(X, Y, chr, max.dist, control.arms = TRUE, remove.duplicates = TRUE)

Arguments

X	Data object. See help(screen.cgh.mrna). For instance, geneExp from our example data set.
Y	Data object. See help(screen.cgh.mrna). For instance, geneCopyNum from our example data set.
chr	chromosome to investigate
max.dist	consider probes within this distance
control.arms	take chromosomal arm information into account
remove.duplicates	for each probe, list exactly one (the closest) match. This is useful in one-to-many matching situations where duplicates may not be desired.

Value

A list with matched indices for the X and Y data sets.

Author(s)

Leo Lahti [e-mail]

References

See citation("pint")

Examples

# Intended for internal use.

pint documentation built on Oct. 31, 2019, 2:41 a.m.