CINdex: Chromosome Instability Index
Version 1.4.0

The CINdex package addresses important area of high-throughput genomic analysis. It allows the automated processing and analysis of the experimental DNA copy number data generated by Affymetrix SNP 6.0 arrays or similar high throughput technologies. It calculates the chromosome instability (CIN) index that allows to quantitatively characterize genome-wide DNA copy number alterations as a measure of chromosomal instability. This package calculates not only overall genomic instability, but also instability in terms of copy number gains and losses separately at the chromosome and cytoband level.

Package details

AuthorLei Song, Krithika Bhuvaneshwar, Yue Wang, Yuanjian Feng, Ie-Ming Shih, Subha Madhavan, Yuriy Gusev
Bioconductor views CopyNumberVariation Genetics GenomicVariation Microarray Sequencing Software aCGH
MaintainerYuriy Gusev <yg63@georgetown.edu>
LicenseGPL (>= 2)
Version1.4.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("CINdex")

Try the CINdex package in your browser

Any scripts or data that you put into this service are public.

CINdex documentation built on May 31, 2017, 2:56 p.m.