Files in CINdex
Chromosome Instability Index
NAMESPACE
DESCRIPTION
build/vignette.rds
data/clin.crc.RData
data/cnvgr.18.auto.RData
data/snpgr.18.auto.RData
data/datalist
data/cyto.cin4heatmap.RData
data/cytobands.cin.RData
data/geneAnno.RData
data/grl.data.RData
data/hg18.ucsctrack.RData
R/cin.core.R
R/cytobands.cin.draw.R
R/extract.genes.in.cyto.regions.R
R/plot.cytobands.R
R/cin.standard.R
R/comp.heatmap.R
R/process.probe.anno.R
R/cin.cytobands.R
R/segments.to.profile.R
R/run.cin.cyto.R
R/ttest.cyto.cin.heatmap.R
R/convert.grl.to.seg.R
R/run.cin.chr.R
R/heatmap.draw.R
R/process.reference.genome.R
R/profile.to.segments.R
vignettes/chr20.png
vignettes/output_chr_plots.pdf
vignettes/CINdex.Rnw
vignettes/biblio.bib
vignettes/CIN_relapse_VS_nonrelapse_for_unnormalized_dendrogram.pdf
vignettes/barplots.pdf
vignettes/PrepareInputData.Rmd
vignettes/hg19ToHg18.over.chain
man/cyto.cin4heatmap.Rd
man/cytobands.cin.Rd
man/run.cin.cyto.Rd
man/hg18.ucsctrack.Rd
man/extract.genes.in.cyto.regions.Rd
man/comp.heatmap.Rd
man/grl.data.Rd
man/cnvgr.18.auto.Rd
man/snpgr.18.auto.Rd
man/ttest.cyto.cin.heatmap.Rd
man/run.cin.chr.Rd
man/clin.crc.Rd
man/geneAnno.Rd
tests/RunTests.R
inst/NEWS
inst/doc/CINdex.pdf
inst/doc/CINdex.Rnw
inst/doc/CINdex.R
inst/doc/PrepareInputData.pdf
inst/doc/PrepareInputData.R
inst/doc/PrepareInputData.Rmd
inst/unitTests/test-run.cin.chr.R
