Man pages for CINdex
Chromosome Instability Index

clin.crcColon cancer clinical dataset
cnvgr.18.autoProbe annotation file for Affymetrix Genome Wide Human SNP...
comp.heatmapA comprehensive heatmap function that plots Chromosome and...
cytobands.cinCytoband CIN dataset
cyto.cin4heatmapCytoband CIN T-test output
extract.genes.in.cyto.regionsGiven an input of cytobands, it outputs a list of genes that...
geneAnnoCDS gene annotation file
grl.dataOutput of segmentation algorithm
hg18.ucsctrackHuman reference annotation file
run.cin.chrCalculate chromosome CIN
run.cin.cytoCalculate cytoband CIN
snpgr.18.autoProbe annotation file for Affymetrix Genome Wide Human SNP...
ttest.cyto.cin.heatmapPerforms T test on cytoband level CIN data, and plots heatmap
CINdex documentation built on Nov. 8, 2020, 7:23 p.m.