biomvRCNS: Copy Number study and Segmentation for multivariate biological data

In this package, a Hidden Semi Markov Model (HSMM) and one homogeneous segmentation model are designed and implemented for segmentation genomic data, with the aim of assisting in transcripts detection using high throughput technology like RNA-seq or tiling array, and copy number analysis using aCGH or sequencing.

AuthorYang Du
Date of publicationNone
MaintainerYang Du <tooyoung@gmail.com>
LicenseGPL (>= 2)
Version1.14.0

View on Bioconductor

Files in this package

biomvRCNS/DESCRIPTION
biomvRCNS/NAMESPACE
biomvRCNS/NEWS
biomvRCNS/R
biomvRCNS/R/biomvRhsmm.R biomvRCNS/R/biomvRplot.R biomvRCNS/R/biomvRseg.R biomvRCNS/R/defClasses.R biomvRCNS/R/misc.R
biomvRCNS/build
biomvRCNS/build/vignette.rds
biomvRCNS/data
biomvRCNS/data/coriell.rda
biomvRCNS/data/encodeTP53.rda
biomvRCNS/data/variosm.rda
biomvRCNS/inst
biomvRCNS/inst/CITATION
biomvRCNS/inst/doc
biomvRCNS/inst/doc/biomvRCNS.R
biomvRCNS/inst/doc/biomvRCNS.Rnw
biomvRCNS/inst/doc/biomvRCNS.pdf
biomvRCNS/inst/extdata
biomvRCNS/inst/extdata/encodeFiles.txt
biomvRCNS/inst/extdata/gmodTP53.gff
biomvRCNS/man
biomvRCNS/man/biomvRCNS-class.Rd biomvRCNS/man/biomvRGviz.Rd biomvRCNS/man/biomvRhsmm.Rd biomvRCNS/man/biomvRmgmr.Rd biomvRCNS/man/biomvRseg.Rd biomvRCNS/man/coriell.Rd biomvRCNS/man/encodeTP53.Rd biomvRCNS/man/hsmmRun.Rd biomvRCNS/man/maxGapminRun.Rd biomvRCNS/man/regionSegAlphaNB.Rd biomvRCNS/man/regionSegCost.Rd biomvRCNS/man/simSegData.Rd biomvRCNS/man/sojournAnno.Rd biomvRCNS/man/splitFarNeighbour.Rd biomvRCNS/man/variosm.Rd
biomvRCNS/src
biomvRCNS/src/biomvRCNS.c
biomvRCNS/vignettes
biomvRCNS/vignettes/biomvRCNS.Rnw
biomvRCNS/vignettes/biomvRCNS.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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