biomvRCNS-class: Class '"biomvRCNS"'

In biomvRCNS: Copy Number study and Segmentation for multivariate biological data

Description

The default object class returned by biomvRhsmm, biomvRseg and biomvRmgmr

Objects from the Class

Objects can be created by calls of the form new("biomvRCNS", ...).

Slots

x:

Object of class "GRanges", with range information either from real positional data or just indices, with input data matrix stored in the meta columns. Additional meta columns for the estimated states and associated probabilities for each sample will also be appended following the input data matrix when using biomvRhsmm.

res:

Object of class "GRanges" , each range represent one continuous segment identified, with sample name slot 'SAMPLE' and segment mean slot 'MEAN' stored in the meta columns

param:

Object of class "list", list of all parameters used in the corresponding model.

Methods

plot

signature(x = "biomvRCNS", y = "ANY"): ...

show

signature(object = "biomvRCNS"): ...

Examples

showClass("biomvRCNS")

biomvRCNS documentation built on Nov. 8, 2020, 6:49 p.m.