getHighestFitnessSolutions: Get Highest Fitness Solutions
In patrickCNMartin/ChIPanalyser: ChIPanalyser: Predicting Transcription Factor Binding Sites
getHighestFitnessSolutions R Documentation
Get Highest Fitness Solutions
Description
getHighestFitnessSolutions extract best solution from a ChIPanalyser GA/evolve Run.
Usage
getHighestFitnessSolutions(population,child=2,method="geometric")
Arguments
population
Population list as output by the evolve function.
child
numeric describing the number of solution to be extracted from Population list.
method
character string describing which scoring method should be used and selected from
"geometric","ks","MSE","pearson","spearman","kendall",
"recall","precesion","fscore","MCC","Accuracy" or "AUC".
Details
This function only serves as a way of extracting data from the poppulation list.
Ultimately - it is just a wrapper for some indexing.
Value
Return the index of the top "child" solutions.
Author(s)
Patrick C.N. Martin <pcnmartin@gmail.com>
Examples
library(ChIPanalyser)
data(ChIPanalyserData)
# See GA vignette for usage
patrickCNMartin/ChIPanalyser documentation built on Nov. 24, 2022, 12:02 a.m.
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| getHighestFitnessSolutions | R Documentation |
Get Highest Fitness Solutions
Description
getHighestFitnessSolutions extract best solution from a ChIPanalyser GA/evolve Run.
Usage
getHighestFitnessSolutions(population,child=2,method="geometric")
Arguments
population |
Population list as output by the |
child |
numeric describing the number of solution to be extracted from Population list. |
method |
character string describing which scoring method should be used and selected from "geometric","ks","MSE","pearson","spearman","kendall", "recall","precesion","fscore","MCC","Accuracy" or "AUC". |
Details
This function only serves as a way of extracting data from the poppulation list. Ultimately - it is just a wrapper for some indexing.
Value
Return the index of the top "child" solutions.
Author(s)
Patrick C.N. Martin <pcnmartin@gmail.com>
Examples
library(ChIPanalyser) data(ChIPanalyserData) # See GA vignette for usage
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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