Files in patrickCNMartin/ChIPanalyser
ChIPanalyser: Predicting Transcription Factor Binding Sites

DESCRIPTION
NAMESPACE
NEWS
R/2AllS4Class_ProfileParameters.R R/3AllGenerics.R R/4AllMethods.R R/AllInitialize.R R/AllShowMethods.R R/GenomicProfileGenericFunctions.R R/computeChIPProfile.R R/computeOccupancy.R R/computeOptimal.R R/computePWMScore.R R/genomeWidePWM.R R/plotOccupancyProfile.R R/plotOptimalHeatMaps.R R/profileAccuracyEstimate.R README.md
data/ChIPanalyserData.rda
inst/extdata/BCDSlx.pfm
inst/unitTests/GPPWithPFM.rda
inst/unitTests/OccupancyAccess.rda
inst/unitTests/OccupancyNoAccess.rda
inst/unitTests/PWMScoreAccess.rda
inst/unitTests/PWMScoreNoAccess.rda
inst/unitTests/genomeWideScoringAccess.rda
inst/unitTests/genomeWideScoringNoAccess.rda
inst/unitTests/test_Units.R man/AllSitesAboveThreshold.Rd man/BPFrequency.Rd man/BPFrequency_-.Rd man/ChIPanalyser-package.Rd man/DNASequenceLength.Rd man/DNASequenceLength_-.Rd man/GRList-class.Rd man/NoAccess.Rd man/PFMFormat.Rd man/PFMFormat_.Rd man/PWMThreshold.Rd man/PWMThreshold_-.Rd man/PWMpseudocount.Rd man/PWMpseudocount_-.Rd man/PositionFrequencyMatrix.Rd man/PositionFrequencyMatrix_-.Rd man/PositionWeightMatrix.Rd man/PositionWeightMatrix_-.Rd man/ScalingFactorPWM.Rd man/ScalingFactorPWM_-.Rd man/averageExpPWMScore.Rd man/backgroundSignal.Rd man/backgroundSignal_-.Rd man/boundMolecules.Rd man/boundMolecules_-.Rd man/chipMean.Rd man/chipMean_-.Rd man/chipSd.Rd man/chipSd_-.Rd man/chipSmooth.Rd man/chipSmooth_-.Rd man/computeChipProfile.Rd man/computeGenomeWidePWMScore.Rd man/computeOccupancy.Rd man/computeOptimal.Rd man/computePWMScore.Rd man/data.Rd man/genomicProfileParameters-class.Rd man/genomicProfileParameters.Rd man/maxPWMScore.Rd man/maxSignal.Rd man/maxSignal_-.Rd man/minPWMScore.Rd man/naturalLog.Rd man/naturalLog_-.Rd man/noOfSites.Rd man/noOfSites_-.Rd man/occupancyProfileParameters-class.Rd man/occupancyProfileParameters.Rd man/ploidy.Rd man/ploidy_-.Rd man/plotOccupancyProfile.Rd man/plotOptimalHeatMaps.Rd man/profileAccuracyEstimate.Rd man/removeBackground.Rd man/removeBackground_-.Rd man/searchSites.Rd man/stepSize.Rd man/stepSize_-.Rd man/strandRule.Rd man/strandRule_-.Rd man/thetaThreshold.Rd man/thetaThreshold_-.Rd man/whichstrand.Rd man/whichstrand_-.Rd tests/runTests.R vignettes/ChIPanalyser.Rmd vignettes/ChIPanalyser.pdf
patrickCNMartin/ChIPanalyser documentation built on Oct. 18, 2017, 10:21 p.m.