ploidy_-: Setter Method for the 'ploidy' slot in an 'parameterOptions'...
In patrickCNMartin/ChIPanalyser: ChIPanalyser: Predicting Transcription Factor Binding Sites
ploidy<- R Documentation
Setter Method for the ploidy slot in an
parameterOptions object
Description
Setter Method for the ploidy slot in an
parameterOptions object
Usage
ploidy(object)<- value
Arguments
object
object is a parameterOptions object
value
value is a positive integer that describes the ploidy of the
organism of interest.
Details
Default value for ploidy is set a 2. It should be mentioned that
ChIPanalyser is based on a model that also considers the ploidy of the
organism however this only considers simple polyploidy (or haploidy). T
he model does not consider hybrids such as wheat.
Value
Returns a parameterOptions object with an updated
value for the ploidy slot.
Author(s)
Patrick C. N. Martin <pm16057@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription
factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
Examples
# Building parameterOptions object
OPP <- parameterOptions()
#Setting new Value for maxSignal
ploidy(OPP) <- 2
patrickCNMartin/ChIPanalyser documentation built on Nov. 24, 2022, 12:02 a.m.
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| ploidy<- | R Documentation |
Setter Method for the ploidy slot in an
parameterOptions object
Description
Setter Method for the ploidy slot in an
parameterOptions object
Usage
ploidy(object)<- value
Arguments
object |
|
value |
|
Details
Default value for ploidy is set a 2. It should be mentioned that
ChIPanalyser is based on a model that also considers the ploidy of the
organism however this only considers simple polyploidy (or haploidy). T
he model does not consider hybrids such as wheat.
Value
Returns a parameterOptions object with an updated
value for the ploidy slot.
Author(s)
Patrick C. N. Martin <pm16057@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
Examples
# Building parameterOptions object OPP <- parameterOptions() #Setting new Value for maxSignal ploidy(OPP) <- 2
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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