maxSignal_-: Setter method for 'maxSignal' slot in a 'parameterOptions'...
In patrickCNMartin/ChIPanalyser: ChIPanalyser: Predicting Transcription Factor Binding Sites
maxSignal<- R Documentation
Setter method for maxSignal slot in a
parameterOptions object.
Description
Setter method for maxSignal slot in a
parameterOptions object.
Usage
maxSignal(object) <- value
Arguments
object
object is a parameterOptions object.
value
value is a numerical value to be assigned to the
maxSignal slot.
Details
In the context of ChIPanalyser, maxSignal represents the
maximum normalised ChIP-Seq signal of a given Transcription factor
(or DNA binding protein). Although, A default value of 1 has been assigned to
this slot, we strongly recommend to tailor this value accordingly.
We strongly encourage to set values when building a
parameterOptions object.
Value
Returns a parameterOptions with an updated
value for maxSignal.
Author(s)
Patrick C.N. Martin <p.martin@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription
factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
Examples
# Building parameterOptions object
OPP <- parameterOptions()
#Setting new Value for maxSignal
maxSignal(OPP) <- 1.8
patrickCNMartin/ChIPanalyser documentation built on Dec. 5, 2024, 9:32 a.m.
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| maxSignal<- | R Documentation |
Setter method for maxSignal slot in a
parameterOptions object.
Description
Setter method for maxSignal slot in a
parameterOptions object.
Usage
maxSignal(object) <- value
Arguments
object |
|
value |
|
Details
In the context of ChIPanalyser, maxSignal represents the
maximum normalised ChIP-Seq signal of a given Transcription factor
(or DNA binding protein). Although, A default value of 1 has been assigned to
this slot, we strongly recommend to tailor this value accordingly.
We strongly encourage to set values when building a
parameterOptions object.
Value
Returns a parameterOptions with an updated
value for maxSignal.
Author(s)
Patrick C.N. Martin <p.martin@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
Examples
# Building parameterOptions object
OPP <- parameterOptions()
#Setting new Value for maxSignal
maxSignal(OPP) <- 1.8
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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