removeBackground: Accessor Method for the 'removeBackground' slot in a...
In patrickCNMartin/ChIPanalyser: ChIPanalyser: Predicting Transcription Factor Binding Sites
removeBackground R Documentation
Accessor Method for the removeBackground slot in a
parameterOptions object
Description
Accessor Method for the removeBackground slot in a
parameterOptions object
Usage
removeBackground(object)
Arguments
object
object is a parameterOptions object
Details
A numeric value describing a threshold at which Occupancy signals must be
removed (Default is set at 0). The removal of Occupancy signals will occur
when computing computeOccupancy
(see computeOccupancy function)
Value
Returns the value assigned to the removeBackground slot in a
parameterOptions object
Author(s)
Patrick C. N. Martin <pm16057@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription
factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
Patrick C.N. Martin and Nicolae Radu Zabe (2020) Dissecting the binding mechanisms of transcription factors to DNA using a statistical thermodynamics framework. CSBJ, 18, 3590-3605.
Examples
#Building parameterOptions object
OPP <- parameterOptions()
#Accessing Value for removeBackground
removeBackground(OPP)
patrickCNMartin/ChIPanalyser documentation built on Dec. 5, 2024, 9:32 a.m.
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| removeBackground | R Documentation |
Accessor Method for the removeBackground slot in a
parameterOptions object
Description
Accessor Method for the removeBackground slot in a
parameterOptions object
Usage
removeBackground(object)
Arguments
object |
|
Details
A numeric value describing a threshold at which Occupancy signals must be
removed (Default is set at 0). The removal of Occupancy signals will occur
when computing computeOccupancy
(see computeOccupancy function)
Value
Returns the value assigned to the removeBackground slot in a
parameterOptions object
Author(s)
Patrick C. N. Martin <pm16057@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94. Patrick C.N. Martin and Nicolae Radu Zabe (2020) Dissecting the binding mechanisms of transcription factors to DNA using a statistical thermodynamics framework. CSBJ, 18, 3590-3605.
Examples
#Building parameterOptions object
OPP <- parameterOptions()
#Accessing Value for removeBackground
removeBackground(OPP)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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