maxSignal: Accessor method for the 'maxSignal' slot in a...
In patrickCNMartin/ChIPanalyser: ChIPanalyser: Predicting Transcription Factor Binding Sites
maxSignal R Documentation
Accessor method for the maxSignal slot in a
parameterOptions object.
Description
Accessor method for the maxSignal slot in a
parameterOptions object.
Usage
maxSignal(object)
Arguments
object
object is a parameterOptions object.
Details
In the context of ChIPanalyser, maxSignal represents the
maximum normalised ChIP-Seq signal of a given Transcription factor
(or DNA binding protein). Although, A default value of 1 has been assigned to
this slot, we strongly recommend to tailor this value accordingly.
We strongly encourage to set values when building a
parameterOptions object.
Value
Returns the value assigned to the maxSignal slot in a
parameterOptions object.
Author(s)
Patrick C.N. Martin <p.martin@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription
factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
Patrick C.N. Martin and Nicolae Radu Zabe (2020) Dissecting the binding mechanisms of transcription factors to DNA using a statistical thermodynamics framework. CSBJ, 18, 3590-3605.
Examples
# Building parameterOptions object
OPP <- parameterOptions()
#Setting new Value for maxSignal
maxSignal(OPP)
patrickCNMartin/ChIPanalyser documentation built on Nov. 24, 2022, 12:02 a.m.
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| maxSignal | R Documentation |
Accessor method for the maxSignal slot in a
parameterOptions object.
Description
Accessor method for the maxSignal slot in a
parameterOptions object.
Usage
maxSignal(object)
Arguments
object |
|
Details
In the context of ChIPanalyser, maxSignal represents the
maximum normalised ChIP-Seq signal of a given Transcription factor
(or DNA binding protein). Although, A default value of 1 has been assigned to
this slot, we strongly recommend to tailor this value accordingly.
We strongly encourage to set values when building a
parameterOptions object.
Value
Returns the value assigned to the maxSignal slot in a
parameterOptions object.
Author(s)
Patrick C.N. Martin <p.martin@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94. Patrick C.N. Martin and Nicolae Radu Zabe (2020) Dissecting the binding mechanisms of transcription factors to DNA using a statistical thermodynamics framework. CSBJ, 18, 3590-3605.
Examples
# Building parameterOptions object OPP <- parameterOptions() #Setting new Value for maxSignal maxSignal(OPP)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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