loci: Accessor Method for the 'loci' slot in a 'ChIPScore' object
In patrickCNMartin/ChIPanalyser: ChIPanalyser: Predicting Transcription Factor Binding Sites
loci R Documentation
Accessor Method for the loci slot in a
ChIPScore object
Description
Setter Method for the loci slot in a
ChIPScore object
Usage
loci(object)
Arguments
object
object is ChIPScore object
Details
When using the processingChIP, this functions will return a
name GRanges with the loci of interest. These loci will either result from
user input or extracted from the ChIP profiles (see processingChIP
and lociWidth). This functions enalbles
you to extract those loci from the ChIPScore object.
Value
Returns the value assigned to the loci slot in a
ChIPScore object.
Author(s)
Patrick C. N. Martin <p.martin@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription
factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
Examples
# Loading data
data(ChIPanalyserData)
chip<-processingChIP(chip,top)
loci(chip)
patrickCNMartin/ChIPanalyser documentation built on Dec. 5, 2024, 9:32 a.m.
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| loci | R Documentation |
Accessor Method for the loci slot in a
ChIPScore object
Description
Setter Method for the loci slot in a
ChIPScore object
Usage
loci(object)
Arguments
object |
|
Details
When using the processingChIP, this functions will return a
name GRanges with the loci of interest. These loci will either result from
user input or extracted from the ChIP profiles (see processingChIP
and lociWidth). This functions enalbles
you to extract those loci from the ChIPScore object.
Value
Returns the value assigned to the loci slot in a
ChIPScore object.
Author(s)
Patrick C. N. Martin <p.martin@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
Examples
# Loading data
data(ChIPanalyserData)
chip<-processingChIP(chip,top)
loci(chip)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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