An R package for integrated differential expression and differential network analysis based on omic data for biomarker candidate selection. Both correlation and partial correlation can be used to generate differential network to aid the traditional differential expression analysis to identify changes between biomolecules on both their expression and pairwise association levels.
Package details 


Author  Yiming Zuo with contributions from Kian Ghaffari and Zhenzhi Li 
Bioconductor views  BiologicalQuestion DifferentialExpression MassSpectrometry Metabolomics ResearchField Software StatisticalMethod 
Maintainer  Yiming Zuo <yimingzuo@gmail.com> and Kian Ghaffari <kg737@georgetown.edu> 
License  Artistic2.0 
Version  1.1.0 
URL  http://github.com/ressomlab/INDEED 
Package repository  View on GitHub 
Installation 
Install the latest version of this package by entering the following in R:

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