Man pages for kg737/INDEED_Patch
Integrated Differential Expression and Differential Network Analysis (INDEED)

choose_rhoGenerating a list of errors and their corresponding log(rho)...
color.barColor Bar
compute_corCompute the correlation
compute_dnsCalculate the differential network score
compute_parCompute the partial correlation
INDEEDINDEED: A package for biomarker candidate prioritization.
loglik_aveCreate log likelihood error function
Met_Group_GUGroup label.
Met_GUGU CIRR and GU HCC combined.
Met_name_GUKEGG ID
network_displayNon-Interactive Network Visualization for INDEED Partial and...
networkVisInteractive Network Visualization for INDEED Partial and...
non_partial_corNon-partial correlaton analysis
partial_corPartial correlaton analysis
permutation_corPermutations to build a differential network using...
permutation_pcPermutations to build differential network using partial...
permutation_thresCalculate the positive and negative threshold based on the...
pvalue_logitObtain p-values using logistic regression
pvalue_M_GUP-values obtained by differential expression (DE) analysis.
scale_rangeScale list of numbers
select_rho_partialData preprocessing for partial correlaton analysis
kg737/INDEED_Patch documentation built on May 22, 2019, 6:32 p.m.