ManuelGoepferich/LINC_justlinc: annotation of noncoding RNAs and coexpressed genes

This package enables the annotation of ncRNAs based on expression datasets. The underlying principle is called 'guilty by association' meaning a non-coding RNA is assumed to the have the a similar biological function as the group of its associated (co-expressed) protein-coding genes. In the first step a correlation matrix is computed storing the correlation of coding and non-coding genes. Secondly, query genes and their associated genes with high correlations can be extracted. The third step calls a gene ontology to retrieve the biological function of associated genes.

Getting started

Package details

AuthorManuel Goepferich
Bioconductor views BiologicalQuestion GeneRegulation Software
MaintainerManuel Goepferich <[email protected]>
LicenseArtistic-2.0
Version0.99.7
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("ManuelGoepferich/LINC_justlinc")
ManuelGoepferich/LINC_justlinc documentation built on May 7, 2019, 2:47 p.m.