getlinc-methods: Subsetting for 'LINC' objects

In ManuelGoepferich/LINC_justlinc: annotation of noncoding RNAs and coexpressed genes

Description

getlinc is a function to derive substructures from LINC objects.

Usage

getlinc(input,
        subject = "queries")

Arguments

input	a 'LINC' object, for instance LINCmatrix
subject	has to be one of c("queries", "geneSystem", "results", "history", "customID")

Value

the respective substructure or infromation

Methods

signature(input = "ANY", subject = "character")

(see details)

Author(s)

Manuel Goepferich

See Also

linc ;

Examples

data(BRAIN_EXPR)

# getlinc() is used to accesss information
getlinc(crbl_cluster, subject = "geneSystem")
getlinc(crbl_cluster, subject = "queries")
getlinc(crbl_cluster, subject = "customID")
str(crbl_matrix@assignment) # protein-coding genes are stored in the 'assignment' slot

# write to a table
#linctable(file_name = "crbl_co_expr", input = crbl_cluster)

ManuelGoepferich/LINC_justlinc documentation built on May 7, 2019, 2:47 p.m.