feature: Manipulate Objects Of The 'LINC' class

In ManuelGoepferich/LINC_justlinc: annotation of noncoding RNAs and coexpressed genes

Description

feature provides useful options intended to be used with 'LINC' objects.

Usage

feature(setLevel   = NULL,
        customID   = NULL,
        customCol  = "black",
        showLevels = FALSE)

Arguments

setLevel	a character string of the class the object should be converted into
customID	a character string of a name for the object
customCol	a character string of a valid colour for the object
showLevels	whether to show the inherited classes of the object TRUE or not FALSE

Details

Custom ids and colours enable the identification of a particular object in plots created by plotlinc and querycluster. With setLevel it is possible to change the class of an object.

feature works in combination with the plus operator: 'object' + feature(customID = ..., customCol = ...)

Value

an object of the class 'LINCfeature' (S4) with 5 Slots (not shown)

Author(s)

Manuel Goepferich

See Also

querycluster ; strlinc

Examples

data(BRAIN_EXPR)

# add a custom name
crbl_cluster_feat <- crbl_cluster + feature(customID = "CEREBELLUM")
plotlinc(crbl_cluster_feat)

ManuelGoepferich/LINC_justlinc documentation built on May 7, 2019, 2:47 p.m.