deltaCaptureC: This Package Discovers Meso-scale Chromatin Remodeling from 3C Data

This package discovers meso-scale chromatin remodelling from 3C data. 3C data is local in nature. It givens interaction counts between restriction enzyme digestion fragments and a preferred 'viewpoint' region. By binning this data and using permutation testing, this package can test whether there are statistically significant changes in the interaction counts between the data from two cell types or two treatments.

Getting started

Package details

AuthorMichael Shapiro [aut, cre] (<>)
Bioconductor views BiologicalQuestion StatisticalMethod
MaintainerMichael Shapiro <>
LicenseMIT + file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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deltaCaptureC documentation built on Nov. 8, 2020, 5:31 p.m.