getRunTotals: Get the runs and their values

In deltaCaptureC: This Package Discovers Meso-scale Chromatin Remodeling from 3C Data

Description

This function finds the runs of consecutive ranges in which the sign of the data does not change. It returns a GRanges object containing the contiguous ranges and the weighted sum of data in each.

Usage

getRunTotals(se, innerRegion, colName = "delta")

Arguments

se	a SummarizedExperiment whose first assay has a column named colName. Typically this will be a one-column matrix with delta.
innerRegion	a Granges object defining the region surrounding the viewpoint to be excluded from run total calculations
colName	defaults to 'delta'

Value

a GRanges object giving the contiguous regions and their respective sums

Examples

runTotals = getRunTotals(binnedDeltaSE,viewpointRegion)

deltaCaptureC documentation built on Nov. 8, 2020, 5:31 p.m.