getDeltaSE: Make delta summarized experiment:

In deltaCaptureC: This Package Discovers Meso-scale Chromatin Remodeling from 3C Data

Description

This function takes a SummarizedExperiment with count data and produces a SummarizedExperiment of the delta track. There should exactly two values for treatment, i.e., byTreatment

Usage

getDeltaSE(countsSE, byTreatment = "treatment")

Arguments

countsSE	A summarized experiment with assay counts and optionally assay normalized counts
byTreatment	= 'treatment' Allows for specifying some other condition than 'treatment'

Value

A summarized experiment with a single assay consisting of a single column, the delta mean normalized counts.

Examples

aSmallDeltaSE = getDeltaSE(miniSE)

deltaCaptureC documentation built on Nov. 8, 2020, 5:31 p.m.