cytoscape/r2cytoscape: Functions for Cytoscape Automation

A set of simple functions to make Cytoscape automation easier in R. With this package you can conduct network analysis and visualization in Cytoscape from within R, import and extract data frames, transfer networks between igraph and Cytoscape, save high-resolution network images, and much more. These functions require that Cytoscape 3.6.0 (or greater) is installed and running. For the full capabilities of CyREST and Commands for Cytoscape automation, refer to <> and associated Swagger documentation.

Getting started

Package details

Bioconductor views BiologicalQuestion BiomedicalInformatics GraphAndNetwork Network SystemsBiology
MaintainerAlex Pico <[email protected]>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
cytoscape/r2cytoscape documentation built on Jan. 27, 2018, 2:33 a.m.