createIgraphFromNetwork: Create an igraph network from a Cytoscape network

In cytoscape/r2cytoscape: Functions for Cytoscape Automation

Description

Takes a Cytoscape network and generates data frames for vertices and edges to send to the graph_from_data_frame function. Returns the network.suid and applies the perferred layout set in Cytoscape preferences.

Usage

createIgraphFromNetwork(network = "current",
  base.url = "http://localhost:1234/v1")

Arguments

network	name or suid of the network; default is "current" network
base.url	cyrest base url for communicating with cytoscape

Details

Nodes and edges from the Cytoscape network will be translated into vertices and edges in igraph. Associated table columns will also be passed to igraph as vertiex and edge attributes.

Value

(igraph) an igraph network

See Also

createNetwork, createIgraphFromNetwork

Examples

createNetworkFromIgraph(g)

cytoscape/r2cytoscape documentation built on May 4, 2019, 6:36 p.m.