createNetworkFromIgraph: Create a Cytoscape network from an igraph network

In cytoscape/r2cytoscape: Functions for Cytoscape Automation

Description

Takes an igraph network and generates data frames for nodes and edges to send to the createNetwork function. Returns the network.suid and applies the perferred layout set in Cytoscape preferences.

Usage

createNetworkFromIgraph(igraph, network.name = "MyNetwork",
  collection.name = "myNetworkCollection",
  base.url = "http://localhost:1234/v1", ...)

Arguments

igraph	(igraph) igraph network object
network.name	(char) network name
collection.name	(char) network collection name
base.url	cyrest base url for communicating with cytoscape
...	params for nodeSet2JSON() and edgeSet2JSON(); see createNetwork

Details

Vertices and edges from the igraph network will be translated into nodes and edges in Cytoscape. Associated attributes will also be passed to Cytoscape as node and edge table columns.

Value

(int) network SUID

See Also

createNetwork, createIgraphFromNetwork

Examples

createNetworkFromIgraph(g)

cytoscape/r2cytoscape documentation built on May 4, 2019, 6:36 p.m.