BASiNET: Classification of RNA Sequences using Complex Network Theory

It makes the creation of networks from sequences of RNA, with this is done the abstraction of characteristics of these networks with a methodology of threshold for the purpose of making a classification between the classes of the sequences. There are four data present in the 'BASiNET' package, "sequences", "sequences2", "sequences-predict" and "sequences2-predict" with 11, 10, 11 and 11 sequences respectively. These sequences were taken from the data set used in the article (LI, Aimin; ZHANG, Junying; ZHOU, Zhongyin, 2014) <doi:10.1186/1471-2105-15-311>, these sequences are used to run examples. The BASiNET was published on Nucleic Acids Research, (ITO, Eric; KATAHIRA, Isaque; VICENTE, Fábio; PEREIRA, Felipe; LOPES, Fabrício, 2018) <doi:10.1093/nar/gky462>.

Package details

AuthorEric Augusto Ito
Bioconductor views BiologicalQuestion GenePrediction Software
MaintainerEric Augusto Ito <[email protected]>
LicenseGPL-3
Version0.0.4
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("BASiNET")

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BASiNET documentation built on Oct. 3, 2018, 1:04 a.m.