NathanSkene/EWCE: Expression Weighted Celltype Enrichment

Used to determine which cell types are enriched within gene lists. The package provides tools for testing enrichments within simple gene lists (such as human disease associated genes) and those resulting from differential expression studies. The package does not depend upon any particular Single Cell Transcriptome dataset and user defined datasets can be loaded in and used in the analyses.

Getting started

Package details

AuthorDr Nathan Skene
Bioconductor views BiomedicalInformatics DifferentialExpression FunctionalGenomics GeneExpression GeneSetEnrichment Genetics Microarray OneChannel Proteomics RNASeq Transcription Visualization mRNAMicroarray
MaintainerNathan Skene <[email protected]>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
NathanSkene/EWCE documentation built on March 16, 2019, 7:28 p.m.