View source: R/check_percent_hits.R
check_percent_hits | R Documentation |
After you run bootstrap_enrichment_test, check what percentage of significantly enriched cell types match an expected cell type.
check_percent_hits(
full_results,
target_celltype,
mtc_method = "bonferroni",
q_threshold = 0.05,
verbose = TRUE
)
full_results |
|
target_celltype |
Substring to search to matching cell types (case-insensitive). |
mtc_method |
Multiple-testing correction method. |
q_threshold |
Corrected significance threshold. |
verbose |
Print messages. |
Report list.
## Bootstrap significance test,
## no control for transcript length or GC content
## Use pre-computed results to speed up example
full_results <- EWCE::example_bootstrap_results()
report <- EWCE::check_percent_hits(
full_results = full_results,
target_celltype = "microglia"
)
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