bootstrap_plot: Bootstrap plot

In NathanSkene/EWCE: Expression Weighted Celltype Enrichment

Bootstrap plot

Description

Plot bootstrap enrichment results. Support function for generate_bootstrap_plots.

Usage

bootstrap_plot(
  gene_data,
  exp_mats = NULL,
  save_dir = file.path(tempdir(), "BootstrapPlots"),
  listFileName,
  signif_ct = NULL,
  hit_thresh = 25,
  facets = "CellType",
  scales = "free_x",
  show_plot = TRUE,
  verbose = TRUE
)

Arguments

gene_data	Output from compute_gene_scores.
exp_mats	Output of generate_bootstrap_plots_exp_mats.
save_dir	Directory to save plots to.
listFileName	listFileName
signif_ct	Significant celltypes to include the plots.
facets	Please use rows and cols instead.
scales	Are scales shared across all facets (the default, "fixed"), or do they vary across rows ("free_x"), columns ("free_y"), or both rows and columns ("free")?
show_plot	Print the plot.

Value

Null output.

NathanSkene/EWCE documentation built on Nov. 3, 2024, 8:16 a.m.