bootstrap_plot: Bootstrap plot

View source: R/bootstrap_plot.R

bootstrap_plotR Documentation

Bootstrap plot

Description

Plot bootstrap enrichment results. Support function for generate_bootstrap_plots.

Usage

bootstrap_plot(
  gene_data,
  exp_mats = NULL,
  save_dir = file.path(tempdir(), "BootstrapPlots"),
  listFileName,
  signif_ct = NULL,
  hit_thresh = 25,
  facets = "CellType",
  scales = "free_x",
  show_plot = TRUE,
  verbose = TRUE
)

Arguments

gene_data

Output from compute_gene_scores.

exp_mats

Output of generate_bootstrap_plots_exp_mats.

save_dir

Directory to save plots to.

listFileName

listFileName

signif_ct

Significant celltypes to include the plots.

facets

[Deprecated] Please use rows and cols instead.

scales

Are scales shared across all facets (the default, "fixed"), or do they vary across rows ("free_x"), columns ("free_y"), or both rows and columns ("free")?

show_plot

Print the plot.

Value

Null output.


NathanSkene/EWCE documentation built on Dec. 1, 2023, 1:41 a.m.