Files in NathanSkene/EWCE
Expression Weighted Celltype Enrichment

.DS_Store
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
EWCE.Rproj
EWCE.bib
NAMESPACE
R/add.res.to.merging.list.r R/bin.columns.into.quantiles.r R/bin.specificity.into.quantiles.r R/bootstrap.enrichment.test.r R/cell.list.dist.r R/check.ewce.genelist.input.r R/controlled_geneset_enrichment.r R/convert_new_ewce_to_old.r R/convert_old_ewce_to_new.r R/data.r R/drop.uninformative.genes.r R/ewce.plot.r R/ewce_expression_data.r R/filter.genes.without.1to1.homology.r R/fix.bad.hgnc.symbols.r R/fix.bad.mgi.symbols.r R/generate.bootstrap.plots.for.transcriptome.r R/generate.bootstrap.plots.r R/generate.celltype.data.r R/generate_controlled_bootstrap_geneset.r R/get.celltype.table.r R/get.length.of.longest.string.r R/get_summed_proportions.r R/load.linnarsson.sct.data.r R/merge_two_expfiles.r R/merged_ewce.r R/multiplot.r R/prep.dendro.r R/prepare.genesize.control.network.r Readme.Rmd Readme.md
Readme_files/figure-markdown_github/unnamed-chunk-13-1.png
Readme_files/figure-markdown_github/unnamed-chunk-17-1.png
Readme_files/figure-markdown_github/unnamed-chunk-18-1.png
Readme_files/figure-markdown_github/unnamed-chunk-2-1.png
Readme_files/figure-markdown_github/unnamed-chunk-20-1.png
Readme_files/figure-markdown_github/unnamed-chunk-22-1.png
Readme_files/figure-markdown_github/unnamed-chunk-24-1.png
Readme_files/figure-markdown_github/unnamed-chunk-25-1.png
Readme_files/figure-markdown_github/unnamed-chunk-4-1.png
Readme_files/figure-markdown_github/unnamed-chunk-5-1.png
Readme_files/figure-markdown_github/unnamed-chunk-6-1.png
data/all_hgnc.rda
data/all_hgnc_wtEnsembl.rda
data/all_mgi.rda
data/all_mgi_wtEnsembl.Rda
data/alzh_gwas_top100.rda
data/cortex_mrna.rda
data/ctd.rda
data/ctd_Tasic.Rda
data/datalist
data/ensembl_transcript_lengths_GCcontent.rda
data/example_genelist.rda
data/hpsd_genes.rda
data/id_genes.rda
data/mgi_synonym_data.rda
data/mouse_to_human_homologs.rda
data/rbfox_genes.rda
data/schiz_genes.rda
data/tt_alzh.rda
data/tt_alzh_BA36.rda
data/tt_alzh_BA44.rda
man/add.res.to.merging.list.Rd man/all_hgnc.Rd man/all_hgnc_wtEnsembl.Rd man/all_mgi.Rd man/all_mgi_wtEnsembl.Rd man/alzh_gwas_top100.Rd man/bin.columns.into.quantiles.Rd man/bin.specificity.into.quantiles.Rd man/bootstrap.enrichment.test.Rd man/check.ewce.genelist.inputs.Rd man/controlled_geneset_enrichment.Rd man/convert_new_ewce_to_old.Rd man/convert_old_ewce_to_new.Rd man/cortex_mrna.Rd man/ctd.Rd man/drop.uninformative.genes.Rd man/ensembl_transcript_lengths_GCcontent.Rd man/ewce.plot.Rd man/ewce_expression_data.Rd man/example_genelist.Rd man/filter.genes.without.1to1.homolog.Rd man/fix.bad.hgnc.symbols.Rd man/fix.bad.mgi.symbols.Rd man/generate.bootstrap.plots.Rd man/generate.bootstrap.plots.for.transcriptome.Rd man/generate.celltype.data.Rd man/generate_controlled_bootstrap_geneset.Rd man/get.celltype.table.Rd man/get.length.of.longest.string.Rd man/get_summed_proportions.Rd man/hpsd_genes.Rd man/id_genes.Rd man/load.linnarsson.sct.data.Rd man/merge_two_expfiles.Rd man/merged_ewce.Rd man/mgi_synonym_data.Rd man/mouse_to_human_homologs.Rd man/prep.dendro.Rd man/prepare.genesize.control.network.Rd man/rbfox_genes.Rd man/schiz_genes.Rd man/tt_alzh.Rd man/tt_alzh_BA36.Rd man/tt_alzh_BA44.Rd
nature.csl
vignettes/.DS_Store
vignettes/MRK_List2.rpt
vignettes/nature.csl
NathanSkene/EWCE documentation built on June 7, 2019, 5:28 p.m.