prepare_genesize_control_network: Prepare genesize control network

Description Usage Arguments Value Examples

View source: R/prepare_genesize_control_network.r

Description

prepare_genesize_control_network takes a genelist and finds semi-randomly selected gene lists which are matched for gene length and GC content

Usage

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prepare_genesize_control_network(
  hits,
  bg,
  numBOOT = 10000,
  sctSpecies,
  sct_data
)

Arguments

hits

Array of MGI gene symbols containing the target gene list. Must be HGNC symbols.

bg

Array of MGI gene symbols containing the background gene list (including hit genes). Must be HGNC symbols.

numBOOT

Number of gene lists to sample

sctSpecies

Either 'mouse' or 'human' depending on whether MGI or HGNC symbols are used for the single cell dataset

sct_data

List generated using generate_celltype_data

Value

A list containing three data frames:

Examples

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# Called by bootstrap_enrichment_test

NathanSkene/EWCE documentation built on June 19, 2021, 5:40 a.m.