filter_genes_without_1to1_homolog: filter_genes_without_1to1_homolog

View source: R/filter_genes_without_1to1_homolog.r

filter_genes_without_1to1_homologR Documentation

filter_genes_without_1to1_homolog

Description

Deprecated function. Please use filter_nonorthologs instead.

Usage

filter_genes_without_1to1_homolog(
  filenames,
  input_species = "mouse",
  convert_nonhuman_genes = TRUE,
  annot_levels = NULL,
  suffix = "_orthologs",
  verbose = TRUE
)

Arguments

filenames

List of file names for sct_data saved as .rda files.

input_species

Which species the gene names in exp come from.

convert_nonhuman_genes

Whether to convert the exp row names to human gene names.

annot_levels

[Optional] Names of each annotation level.

suffix

Suffix to add to the file name (right before .rda).

verbose

Print messages.

Details

Note: This function replaces the original filter_genes_without_1to1_homolog function. filter_genes_without_1to1_homolog is now a wrapper for filter_nonorthologs.

Value

List of the filtered CellTypeData file names.

Examples

# Load the single cell data
ctd <- ewceData::ctd()
tmp <- tempfile()
save(ctd, file = tmp)
fNames_ALLCELLS_orths <- EWCE::filter_nonorthologs(filenames = tmp)

NathanSkene/EWCE documentation built on July 11, 2024, 4:19 a.m.