filter_ctd_genes: Filter genes in a CellTypeDataset
In NathanSkene/EWCE: Expression Weighted Celltype Enrichment
View source: R/filter_ctd_genes.R
filter_ctd_genes R Documentation
Filter genes in a CellTypeDataset
Description
Removes rows from each matrix within a CellTypeDataset (CTD) that are not
within gene_subset.
Usage
filter_ctd_genes(ctd, gene_subset)
Arguments
ctd
CellTypeDataset.
gene_subset
Genes to subset to.
Value
Filtered CellTypeDataset.
Examples
ctd <- ewceData::ctd()
ctd <- standardise_ctd(ctd, input_species="mouse")
gene_subset <- rownames(ctd[[1]]$mean_exp)[1:100]
ctd_subset <- EWCE::filter_ctd_genes(ctd = ctd, gene_subset = gene_subset)
NathanSkene/EWCE documentation built on April 30, 2024, 5:21 p.m.
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View source: R/filter_ctd_genes.R
| filter_ctd_genes | R Documentation |
Filter genes in a CellTypeDataset
Description
Removes rows from each matrix within a CellTypeDataset (CTD) that are not
within gene_subset.
Usage
filter_ctd_genes(ctd, gene_subset)
Arguments
ctd |
CellTypeDataset. |
gene_subset |
Genes to subset to. |
Value
Filtered CellTypeDataset.
Examples
ctd <- ewceData::ctd()
ctd <- standardise_ctd(ctd, input_species="mouse")
gene_subset <- rownames(ctd[[1]]$mean_exp)[1:100]
ctd_subset <- EWCE::filter_ctd_genes(ctd = ctd, gene_subset = gene_subset)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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