Man pages for NathanSkene/EWCE
Expression Weighted Celltype Enrichment

add.res.to.merging.listAdd to results to merging list
all_hgncAll HGNC gene symbols
all_hgnc_wtEnsemblAll HGNC gene symbols with ENSEMBL gene IDs
all_mgiAll MGI gene symbols
all_mgi_wtEnsemblAll MGI gene symbols with ENSEMBL gene IDs
alzh_gwas_top100Alzheimers disease top100 GWAS genes generated by MAGMA using...
bootstrap.enrichment.testBootstrap celltype enrichment test
check.ewce.genelist.inputscheck.ewce.genelist.inputs
controlled_geneset_enrichmentCelltype controlled geneset enrichment
convert_new_ewce_to_oldconvert_new_ewce_to_old
convert_old_ewce_to_newconvert_old_ewce_to_new
cortex_mrnaKarolinska Cortex/Hippocamus dataset subsample
ctdThe genes from Karolinska cortex/hippocampus and hypothalamus...
drop.uninformative.genesdrop.uninformative.genes
ensembl_transcript_lengths_GCcontentHuman Ensembl Transcript Lengths & GC content
ewce_expression_dataBootstrap celltype enrichment test for transcriptome data
ewce.plotPlot EWCE results
example_genelistExample Gene list
filter.genes.without.1to1.homologfilter.genes.without.1to1.homolog
fix.bad.hgnc.symbolsfix.bad.hgnc.symbols - Given an expression matrix, wherein...
fix.bad.mgi.symbolsfix.bad.mgi.symbols - Given an expression matrix, wherein the...
generate.bootstrap.plotsGenerate bootstrap plots
generate.bootstrap.plots.for.transcriptomeGenerate bootstrap plots
generate.celltype.datagenerate.celltype.data
generate_controlled_bootstrap_genesetgenerate_controlled_bootstrap_geneset
get.celltype.tableget.celltype.table
get.length.of.longest.stringget.length.of.longest.string
get_summed_proportionsGet summed proportions
hpsd_genesHuman post-synaptic density
id_genesIntellectual disability genes
load.linnarsson.sct.dataload.linnarsson.sct.data
merged_ewceMultiple EWCE results from multiple studies
merge_two_expfilesmerge_two_expfiles
mgi_synonym_dataMGI synonym data
mouse_to_human_homologsTable of Human->Mouse orthologs for all human genes
prepare.genesize.control.networkPrepare genesize control network
rbfox_genesRbfox binding genes
schiz_genesSchizophrenia susceptibility genes from CLOZUK
tt_alzhExample table of differential expression (Alzheimer's BA46)
tt_alzh_BA36Example table of differential expression (Alzheimer's BA36)
tt_alzh_BA44Example table of differential expression (Alzheimer's BA44)
NathanSkene/EWCE documentation built on June 24, 2018, 4:16 a.m.