add_res_to_merging_list: Add to results to merging list

Description Usage Arguments Value Examples

View source: R/add_res_to_merging_list.r

Description

add_res_to_merging_list Adds EWCE results to a list for merging analysis

Usage

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add_res_to_merging_list(full_res, existing_results = NULL)

Arguments

full_res

results list generated using bootstrap_enrichment_test or ewce_expression_data functions. Multiple results tables can be merged into one results table, as long as the 'list' column is set to distinguish them.

existing_results

Output of previous rounds from adding results to list. Leave empty if this is the first item in the list.

Value

merged results list

Examples

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# Load the single cell data
library(ewceData)
ctd <- ctd()

# Load the data
tt_alzh <- tt_alzh()
#tt_alzh_BA36 <- tt_alzh_BA36()
# Use 3 bootstrap lists for speed, for publishable analysis use >10000
reps <- 3
# Use 5 up/down regulated genes (thresh) for speed, default is 250
thresh = 5
# Run EWCE analysis
#tt_results <- ewce_expression_data(
#    sct_data = ctd, tt = tt_alzh, annotLevel = 1, thresh = thresh,
#    reps = reps, ttSpecies = "human", sctSpecies = "mouse"
#)
#tt_results_36 <- ewce_expression_data(
#    sct_data = ctd, tt = tt_alzh_BA36, annotLevel = 1, thresh = thresh,
#    reps = reps, ttSpecies = "human", sctSpecies = "mouse"
#)

# Fill a list with the results
results <- add_res_to_merging_list(tt_alzh)
#results <- add_res_to_merging_list(tt_alzh_BA36, results)

NathanSkene/EWCE documentation built on June 19, 2021, 5:40 a.m.