check_ewce_expression_data_args: check_ewce_expression_data_args

In NathanSkene/EWCE: Expression Weighted Celltype Enrichment

check_ewce_expression_data_args

Description

Check the input arguments of the ewce_expression_data.

Usage

check_ewce_expression_data_args(sortBy, tt, thresh)

Arguments

sortBy	Column name of metric in tt which should be used to sort up- from down- regulated genes (Default: "t").
tt	Differential expression table. Can be output of topTable function. Minimum requirement is that one column stores a metric of increased/decreased expression (i.e. log fold change, t-statistic for differential expression etc) and another contains gene symbols.
thresh	The number of up- and down- regulated genes to be included in each analysis (Default: 250).

Value

Null output.

NathanSkene/EWCE documentation built on April 10, 2024, 1:02 a.m.