merge_sce_list: Merge of list of SingleCellExperiment objects

In NathanSkene/EWCE: Expression Weighted Celltype Enrichment

Merge of list of SingleCellExperiment objects

Description

Merge of list of CellTypeDatasets stored as SingleCellExperiment objects into one SingleCellExperiment object.

Usage

merge_sce_list(
  SCE_lists = NULL,
  parent_folder = NULL,
  pattern = ".rds$",
  merge_levels = seq(1, 5),
  gene_union = TRUE,
  as_sparse = TRUE,
  as_DelayedArray = TRUE,
  verbose = TRUE
)

Arguments

SCE_lists	A list of SingleCellExperiment objects.
parent_folder	Can supply the path to a folder instead of SCE_lists. Any SingleCellExperiment objects matching pattern will be imported.
merge_levels	CellTypeDataset levels to merge.

Value

SingleCellExperiment

NathanSkene/EWCE documentation built on April 30, 2024, 5:21 p.m.