sct_normalize: Normalize expression matrix

In NathanSkene/EWCE: Expression Weighted Celltype Enrichment

Normalize expression matrix

Description

Normalize expression matrix by accounting for library size. Uses sctransform.

Usage

sct_normalize(exp, as_sparse = TRUE, verbose = TRUE)

Arguments

exp	Gene x cell expression matrix.
as_sparse	Convert exp to sparse matrix.
verbose	Print messages.

Value

Normalised expression matrix.

Examples

cortex_mrna <- ewceData::cortex_mrna()
exp_sct_normed <- EWCE::sct_normalize(exp = cortex_mrna$exp[1:300, ])

NathanSkene/EWCE documentation built on July 11, 2024, 4:19 a.m.