BiostatQian/ASAFE: Ancestry Specific Allele Frequency Estimation

Given admixed individuals' bi-allelic SNP genotypes and ancestry pairs (where each ancestry can take one of three values) for multiple SNPs, perform an EM algorithm to deal with the fact that SNP genotypes are unphased with respect to ancestry pairs, in order to estimate ancestry-specific allele frequencies for all SNPs.

Package details

AuthorQian Zhang <[email protected]>
Bioconductor views BiomedicalInformatics ExperimentalDesign Genetics GenomeWideAssociation LinkageDisequilibrium SNP
MaintainerQian Zhang <[email protected]>
LicenseArtistic-2.0
Version0.99.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("BiostatQian/ASAFE")
BiostatQian/ASAFE documentation built on May 6, 2019, 7:56 a.m.